top of page
User Manual
Installing
Compression - Quick Guide
Compressing FASTQ
Compressing BAM
Compressing VCF
Command Line Reference
Archiving
Encryption
Losslessness
Using Genozip on an HPC
Analyzing Data
Integrating with DICOM
Resources
Publications & Citing
Release Notes
Genozip MIME type
License
Source Code
Benchmarks
Our Users
Institutions using Genozip
User testimonials
User locations
Contact Us
More
Use tab to navigate through the menu items.
Get Genozip Now
Log In
Analyzing data
Genozip includes a number of analysis tools:
Summary statistics
Coverage and Depth (BAM and FASTQ)
Sex Classification (BAM and FASTQ)
idxstats (BAM and FASTQ)
Compression Performance
Filtering & subsetting
Subsetting command line options
Filtering by species using kraken2 (BAM and FASTQ)
Downsampling and Sharding
Format conversions
Dual-Coordinate VCF
Converting BAM/SAM to FASTQ
Converting 23andMe to VCF
Converting MultiFASTA to PHYLIP and back
Miscellaneous
FASTQ-to-BAM pipeline using Genozip
Fixing Contig Names (eg chr22 ⇆ 22)
Handling GATK's "Unexpected base in allele bases"
Genozip diagnostics (for technical support)
bottom of page
